Publications and Presentations

Found 258 results
2017
Mining the Pharmacoepigenome for CNS Drug Discovery, Higgins, Gerald A. , Systems Biology: Global Regulation of Gene Expression, 03/2017, Cold Spring Harbor Laboratory, NY, (2017)
Mining the topography and dynamics of the 4D Nucleome to identify novel CNS drug pathways., Higgins, Gerald A., Allyn-Feuer Ari, Georgoff Patrick, Nikolian Vahagn, Alam Hasan, and Athey Brian D. , Methods, 2017 Apr 03, (2017)
Network Reconstruction Reveals that Valproic Acid Activates Neurogenic Transcriptional Programs in Adult Brain Following Traumatic Injury., Higgins, Gerald A., Georgoff Patrick, Nikolian Vahagn, Allyn-Feuer Ari, Pauls Brian, Higgins Richard, Athey Brian D., and Alam Hasan E. , Pharm Res, 2017 Mar 07, (2017)
SOCRAT Platform Design: A Web Architecture for Interactive Visual Analytics Applications, Kalinin, Alexandr A., Palanimalai Selvam, and Dinov Ivo D. , HILDA’17, 05/2017, Chicago, IL, USA, p.6, (2017)
2016
Alterations in the human proteome following administration of valproic acid., Georgoff, Patrick E., Halaweish Ihab, Nikolian Vahagn C., Higgins Gerald A., Bonham Tess, Tafatia Celia, Remmer Henriette, Menon Rajasree, Liu Baoling, Li Yongqing, et al. , J Trauma Acute Care Surg, 2016 Dec, Volume 81, Issue 6, p.1020-1027, (2016)
Comparison of genomic data via statistical distribution., Amiri, Saeid, and Dinov Ivo D. , J Theor Biol, 2016 Oct 21, Volume 407, p.318-27, (2016)
Computational Strategies for Identification of Novel Human CNS Drug Targets, Higgins, Gerald A. , 4th Annual World CNS Summit, 02/2016, Cambridge, MA, (2016)
Emerging DNA Sequencing Technologies and Applications, Higgins, Gerald A., and Athey Brian D. , Next-Generation DNA Sequencing Informatics, (2016)
The Epigenome as the Anchor for Next Generation CNS Drug Discovery, Higgins, Gerald A., and Hyman Steven E. , 02/2016, Eli and Edythe L. Broad Institute of MIT and Harvard, (2016)
Linking MedDRA(®)-Coded Clinical Phenotypes to Biological Mechanisms by the Ontology of Adverse Events: A Pilot Study on Tyrosine Kinase Inhibitors., Sarntivijai, Sirarat, Zhang Shelley, Jagannathan Desikan G., Zaman Shadia, Burkhart Keith K., Omenn Gilbert S., He Yongqun, Athey Brian D., and Abernethy Darrell R. , Drug Saf, 2016 Jul, Volume 39, Issue 7, p.697-707, (2016)
Methodological challenges and analytic opportunities for modeling and interpreting Big Healthcare Data., Dinov, Ivo D. , Gigascience, 2016, Volume 5, p.12, (2016)
Predictive Big Data Analytics: A Study of Parkinson's Disease Using Large, Complex, Heterogeneous, Incongruent, Multi-Source and Incomplete Observations., Dinov, Ivo D., Heavner Ben, Tang Ming, Glusman Gustavo, Chard Kyle, Darcy Mike, Madduri Ravi, Pa Judy, Spino Cathie, Kesselman Carl, et al. , PLoS One, 2016, Volume 11, Issue 8, p.e0157077, (2016)
Probability Distributome: A Web Computational Infrastructure for Exploring the Properties, Interrelations, and Applications of Probability Distributions., Dinov, Ivo D., Siegrist Kyle, Pearl Dennis K., Kalinin Alexandr, and Christou Nicolas , Comput Stat, 2016 Jun, Volume 31, Issue 2, p.559-577, (2016)
Stress and glucocorticoid receptor transcriptional programming in time and space: Implications for the brain-gut axis., Wiley, J W., Higgins G A., and Athey B D. , Neurogastroenterol Motil, 2016 Jan, Volume 28, Issue 1, p.12-25, (2016)
A Unified Variational Volume Registration Method Based on Automatically Learned Brain Structures, Lederman, Carl, Joshi Anand, Dinov Ivo, Van Horn John Darrell, Vese Luminita, and Toga Arthur , Math Imaging Vis, 06/2016, Volume 55, Issue 2, (2016)
Volume and Value of Big Healthcare Data., Dinov, Ivo D. , J Med Stat Inform, 2016, Volume 4, (2016)
2015
The 4D nucleome and next generation neuropsychiatric pharmacogenomics., GA, Higgins, A Allyn-Feuer, S Handelman, W Sadee, and BD Athey , Pharmacogenomics, 08/2015, (2015)
Big Data and Data Science: What does this mean for Society, High Education and Libraries?, Athey, Brian , Great Plains Network Annual Meeting, Keynote Presentation, 05/2015, Kansas, Missouri, (2015)
Data Science and the Library – Opportunity Knocks, Athey, Brian , Great Lakes Science Boot Camp for Librarians, Keynote Presentation, 06/2015, Wayne State University, Detroit, MI, (2015)
Emerging DNA Sequencing Technologies and Applications., GA, Higgins, and BD Athey , Next Generation DNA Sequencing Informatics, Second Edition, (2015)
The epigenome, 4D nucleome and next-generation neuropsychiatric pharmacogenomics., Higgins, Gerald A., Allyn-Feuer Ari, Handelman Samuel, Sadee Wolfgang, and Athey Brian D. , Pharmacogenomics, 2015, Volume 16, Issue 14, p.1649-69, (2015)
Epigenomic mapping and effect sizes of noncoding variants associated with psychotropic drug response., GA, Higgins, A Allyn-Feuer, and BD Athey , Pharmacogenomics, 08/2015, (2015)
Epigenomic mapping and effect sizes of noncoding variants associated with psychotropic drug response., Higgins, Gerald A., Allyn-Feuer Ari, and Athey Brian D. , Pharmacogenomics, 2015, Volume 16, Issue 14, p.1565-83, (2015)
A glutamatergic network mediates lithium response in bipolar disorder as defined by epigenome pathway analysis., Higgins, Gerald A., Allyn-Feuer Ari, Barbour Edward, and Athey Brian D. , Pharmacogenomics, 2015, Volume 16, Issue 14, p.1547-63, (2015)
A glutamatergic network mediates lithium response in bipolar disorder as defined by epigenome pathway analysis., GA, Higgins, A Allyn-Feuer, E Barbour, and BD Athey , Pharmacogenomics, 08/2015, (2015)
The Noncoding Genome and Human Health, Higgins, Gerald A. , Summit on Data Science, 08/2015, National Institutes of Health, Bethesda, MD, (2015)
SOCR data dashboard: an integrated big data archive mashing medicare, labor, census and econometric information., Husain, Syed S., Kalinin Alexandr, Truong Anh, and Dinov Ivo D. , J Big Data, 2015, Volume 2, (2015)
Structural Neuroimaging Genetics Interactions in Alzheimer's Disease., Moon, Seok Woo, Dinov Ivo D., Kim Jaebum, Zamanyan Alen, Hobel Sam, Thompson Paul M., and Toga Arthur W. , J Alzheimers Dis, 2015, Volume 48, Issue 4, p.1051-63, (2015)
The University of Michigan Data Science Initiative, Athey, Brian , UM - SJTU, 01/2015, Shanghai China, (2015)
2014
2014 Annual Meeting Objectives, Athey, Brian , 2014 tranSMART Foundational Annual Meeting, Invited presentation, 10/2014, Ann Arbor, MI, (2014)
Building Robust PredicTox Ontology Services into the Open Source tranSMART Platform, Athey, Brian , FDA, Invited presentation, 11/2014, (2014)
CLO: The cell line ontology., Sarntivijai, Sirarat, Lin Yu, Xiang Zuoshuang, Meehan Terrence F., Diehl Alexander D., Vempati Uma D., Schürer Stephan C., Pang Chao, Malone James, Parkinson Helen, et al. , J Biomed Semantics, 2014, Volume 5, p.37, (2014)
Lead Plenary Discussant: “Big Data Era: Views and Challenges of Translational Medicine.”, Athey, Brian , Sino-American Symposium on Clinical and Translational Medicine, 06/2014, Bejing, China, (2014)
MetDisease--connecting metabolites to diseases via literature., Duren, William, Weymouth Terry, Hull Tim, Omenn Gilbert S., Athey Brian, Burant Charles, and Karnovsky Alla , Bioinformatics, 2014 Aug 1, Volume 30, Issue 15, p.2239-41, (2014)
Moving Bioinformatics and ‘Big Data’ into Medicine: The Emergence of ‘Psychiatric Pharmacogenomics, Athey, Brian , Bioinformatic & Pharmacogenomics: Managing and Analyzing Big Data Conference, 06/2014, San Diego, CA, (2014)
Moving Bioinformatics into Medicine: The Emergence of Psychiatric Pharmacogenomic, Athey, Brian , Symposium at Hunter College, 06/2014, New York, New York, (2014)
The Next Generation of Psychiatric Pharmacogenomics Research and tranSMART: Status Report and Future Plans, Athey, Brian , 2014 tranSMART Foundational Annual Meeting, 10/2014, (2014)
Personalized Medicine Advances in Neuropsychiatric Disorders, Athey, Brian , PMWC 2014 Silicon Valley., 01/2014, Mountain View, CA, (2014)
Policies Regarding Knowledge Representation, Athey, Brian , AMIA’s Policy Invitational on Personalizing Medicine., 09/2014, Washington, DC, (2014)
Science Gateways – Novel Technologies Enhance Usability for Research Communities, Athey, Brian , 2014 Technology Exchange, 10/2014, Indianapolis, IN, (2014)
tranSMART, Athey, Brian , CASC Fall Meeting., 9/2014, Arlington, VA, (2014)
tranSMART Platform Version 1.2 Launch Events, Athey, Brian , tranSMART Foundation, Invited presentation, 09/2014, Ann Arbor, MI, (2014)
The tranSMART Roadmap, Athey, Brian , 2014 tranSMART Foundational Annual Meeting, 10/2014, Ann Arbor, MI, (2014)
2013
Big Data Lifecycle Management in Biomedical Research in Academic and Pharmaceutical Settings: Current State and Future Trends, Athey, Brian , NIST Joint Cloud - Bigdata Workshop, 01/2013, Gaithersburg, MD, (2013)
Data - sharing and bioinformatics platforms to encourage efficiency and progress in the PGx field, Athey, Brian , 3rd Annual World PGx Summit., 05/2013, San Francisco, CA, (2013)
Genomics and Personalized Medicine: What CIOs and IT Professionals Must Know, Athey, Brian , UMHS Infrastructure and System Operation Meeting, 10/2013, Ann Arbor, MI, (2013)
Grand Challenges in Cyberinfrastructure & Interdisciplinary Research, Athey, Brian , 2013 NSF CyberBridges Workshop, 07/2013, Arlington, VA, (2013)
Keynote Presentation. “ What is the status quo of the tranSMART landscape?”, Athey, Brian , 1st International tranSMART developer and user Meeting, 06/2013, Amsterdam, (2013)
Technological Applications in Research: Big Data: How Might the NNDC Put it Together?, Athey, Brian , The National Network of Depression Centers 2013 Annual Conference, 10/2013, Ann Arbor, MI, (2013)
tranSMART: An Open Source and Community-Driven Informatics and Data Sharing Platform for Clinical and Translational Research, Athey, Brian D., Braxenthaler Michael, Haas Magali, and Guo Yike , AMIA Jt Summits Transl Sci Proc, 2013, Volume 2013, p.6-8, (2013)
tranSMART Community Meeting, Athey, Brian , tranSMART Community Meeting, Invited presentation, 11/2013, Chilly-Mazarin, France, (2013)
The tranSMART Foundation Community Kickoff, Athey, Brian , tranSMART Meeting, Invited presentation, 02/2012, Ann Arbor, MI, (2013)
tranSMART Foundation Membership Program: Building the tranSMART Community, , tranSMART Community Meeting., 11/2013, Paris, France, (2013)
tranSMART Overview University of Michigan - Johns Hopkins University - Collaboration, Athey, Brian , Sanofi tranSMART Meeting., 11/2013, Paris, France, (2013)
The tranSMART Platform and the tranSMART Foundation: Global Cyberinfrastructure for Integrative Informatics Analysis, Athey, Brian , Brown University, 09/2013, Providence, RI, (2013)
tranSMART Update: Challenges, Opportunities, and the Collaborative Roadmap to Enhance Stakeholder Data Sharing and Analytics, Athey, Brian , Systems Pharmacology for the Prediction of Tyrosine Kinase Inhibitor non - QT Cardiotoxicity Workshop, 02/2013, Bethesda, MD, (2013)
tranSMART Workshop Building a Global Translational Research Analytics and Data Sharing Platform, Athey, Brian , Bio-IT World, 04/2013, Boston, MA, (2013)
What is the status quo of the tranSMART landscape?, Athey, Brian , Mental Health Services, Genomic Medicine and Patient Care, Thomson Reuters, Invited presentation, 06/2013, (2013)
2012
1Mind4Research PTSD – TBI Research Platform: Moving the Needle, Athey, Brian , “Building a Platform to ‘Stay off the Grid’” Keynote address, 1/2012, La Jolla, CA, (2012)
Big Data, Big Opportunities: It’s time to Roll up our sleeves and get to work!, Athey, Brian , Big Data Management Conference, Keynote address, 03/2012, Milwaukee, WI, (2012)
Bioinformatics, Clinical, and Health Informatics and the CTSA: Creating new science and sustainable partnerships with Academic and IT Units, Athey, Brian , ICTS Special Symposium, 01/2012, Iowa City, Iowa, (2012)
Building the SMART Platforms Ecosystems: Toward an Apps - based Health Information Economy, Athey, Brian , 11/2012, Chicago, IL, (2012)
Building the SMART Platforms Ecosystems: Toward an Apps-based Health Information Economy, Athey, Brian , Invited presentation, 11/2012, Chicago, IL, (2012)
Collaboration and Crowdsourcing to Accelerate Translational Medicine, Athey, Brian , BioArbor, Presenter, 06/2012, (2012)
Informatics for Integrating Biology and Bedside, Athey, Brian , Informatics: Driving Discovery, Improving Health (IDD 2012), Invited presentation, 04/2012, Cleveland, OH, (2012)
Innovation and the HER at Michigan-A case study, Athey, Brian , Visiting Professor, 09/2012, Boston, MA, (2012)
Integrating Genomics and ‘Omics Data Representation into the EHR “Driving Principles into Practice, Athey, Brian , IT Roundtable, Invited presentation, 04/2012, Washington, DC, (2012)
Interoperable Apps in the Biomedical Space, Athey, Brian , Joint Pistoia Alliance TM Forum “Life Science R&D-App Strategy” Workshop, Invited presentation., 10/2012, Morristown, NJ, (2012)
Introducing tranSMART: An Open Source and Community-Driven Data Sharing and Analytics Platform for Translational Research, Athey, Brian , International Conference on Intelligent Biology and Medicine, Keynote address, 04/2012, Nashville, TN, (2012)
Metab2MeSH: annotating compounds with medical subject headings., Sartor, Maureen A., Ade Alex, Wright Zach, States David, Omenn Gilbert S., Athey Brian, and Karnovsky Alla , Bioinformatics, 2012 May 15, Volume 28, Issue 10, p.1408-10, (2012)
Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data., Karnovsky, Alla, Weymouth Terry, Hull Tim, V Tarcea Glenn, Scardoni Giovanni, Laudanna Carlo, Sartor Maureen A., Stringer Kathleen A., Jagadish H V., Burant Charles, et al. , Bioinformatics, 2012 Feb 1, Volume 28, Issue 3, p.373-80, (2012)
The National Library of Medicine’s Visible Human Project, Athey, Brian , 48th HPC User Forum Meeting, Invited presentation, 09/2012, Dearborn, MI, (2012)
Needs for an expanded ontology-based classification of adverse drug reactions and related mechanisms., Zhichkin, P E., Athey B D., Avigan M I., and Abernethy D R. , Clin Pharmacol Ther, 2012 Jun, Volume 91, Issue 6, p.963-5, (2012)
The NIH National Center for Integrative Biomedical Informatics (NCIBI)., Athey, Brian D., Cavalcoli James D., Jagadish H V., Omenn Gilbert S., Mirel Barbara, Kretzler Matthias, Burant Charles, Isokpehi Raphael D., and DeLisi Charles , J Am Med Inform Assoc, 2012 Mar-Apr, Volume 19, Issue 2, p.166-70, (2012)
Ontology-based combinatorial comparative analysis of adverse events associated with killed and live influenza vaccines., Sarntivijai, Sirarat, Xiang Zuoshuang, Shedden Kerby A., Markel Howard, Omenn Gilbert S., Athey Brian D., and He Yongqun , PLoS One, 2012, Volume 7, Issue 11, p.e49941, (2012)
Rapid Launch of the tranSMART Foundation, Athey, Brian , Partnering for Cures, Invited presentation., 11/2012, New York, NY, (2012)
Researchers' needs for resource discovery and collaboration tools: a qualitative investigation of translational scientists., Bhavnani, Suresh K., Warden Michael, Zheng Kai, Hill Mary, and Athey Brian D. , J Med Internet Res, 2012, Volume 14, Issue 3, p.e75, (2012)
Rethinking the “Honest Broker” in the Changing Face of Security and Privacy, Athey, Brian , AMIA 2012 Annual Symposium, 11/2012, Chicago, IL, (2012)
SaaS-Based Translational Research: The Path to Reality for Research in the Cloud, Athey, Brian , AMIA 2012 Joint Summits on Translational Science, Panelist, 03/2012, San Francisco, CA, (2012)
TBI-PTS Knowledge Integration Program, Athey, Brian , One Mind for Research Conference, Panelist, 05/2012, Los Angeles, CA, (2012)
Translational Bioinformatics 2012: Priorities and Challenges ahead, Athey, Brian , Federal Drug Administration, Invited presentation, 03/2012, Bethesda, MD, (2012)
tranSMART: An Emerging Global Open Source Community for Data Sharing and Informatics Analysis, Athey, Brian , Systems Biology Seminar, 11/2012, Boston, MA, (2012)
tranSMART: an Open Source Analytical and Data Sharing Informatics Platform Enabling Translational Research, Athey, Brian , AMIA 2012 Joint Summits on Translational Science, Panelist, 03/2012, San Francisco, CA, (2012)
tranSMART: An Open Source Data Sharing and Analytics Platform for Clinical and Translational Research, Athey, Brian , 2012 CTSA Annual Informatics Meeting, 11/2012, Chicago, IL, (2012)
tranSMART Update November 2, 2012, Athey, Brian , eTRICKS Track #4 Kickoff Meeting, IMI European Union, 11/2012, London, UK, (2012)
tranSMART Update October 18, 2012, Athey, Brian , OSEHRA Open Source EHR Summit & Workshop, Invited presentation, 10/2012, Prince Georges County, MD, (2012)
The UMHS as a Learning System, Athey, Brian , UM Learning Health System Workshop, Panelist, 05/2012, Ann Arbor, MI, (2012)
Why can’t we build disease models together?, Athey, Brian , 2012 Sage Bionetworks Commons Congress, Panelist, 04/2012, San Francisco, CA, (2012)
2011
“ ‘Big Data’ Integration and Collaborative Analysis, 2011”, Athey, Brian , Annual RCMI/NCIBI Ann Arbor Meeting: Keynote address, 06/2011, Ann Arbor, MI, (2011)
The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research., Tenenbaum, Jessica D., Whetzel Patricia L., Anderson Kent, Borromeo Charles D., Dinov Ivo D., Gabriel Davera, Kirschner Beth, Mirel Barbara, Morris Tim, Noy Natasha, et al. , J Biomed Inform, 2011 Feb, Volume 44, Issue 1, p.137-45, (2011)
“Establishing Data Infrastructures for ‘Omics and other Systems Biology Technologies” , Athey, Brian , The Promise, Pitfalls, and Policy Implications of Whole Genome Sequencing, Society for Clinical and Translational Research, Panel Chair, 04/2011, Washington, DC, (2011)
“Informatics and IT to Enable Personalized Medicine and Healthcare: What is Really Needed?” , Athey, Brian , Cyberinfrastructure Days, 12/2011, Ann Arbor, MI, (2011)
Integrated metabolome and transcriptome analysis of the NCI60 dataset., Su, Gang, Burant Charles F., Beecher Christopher W., Athey Brian D., and Meng Fan , BMC Bioinformatics, 2011, Volume 12 Suppl 1, p.S36, (2011)
“Issues Surrounding Enterprise Data Infrastructure and Governance Systems to Support Research at the University of Michigan — A View from the Health System”, Athey, Brian , Data Lifecycle Management Workshop, Keynote address, 07/2011, Princeton, NJ, (2011)
“One Mind for Research Presentation", Athey, Brian , Unleashing the Power of Health Information Technology for Wounded Warriors: Liberating Data for Research Symposium, 11/2011, Washington, DC, (2011)
2010
2K09 and thereafter : the coming era of integrative bioinformatics, systems biology and intelligent computing for functional genomics and personalized medicine research., Yang, Jack Y., Niemierko Andrzej, Bajcsy Ruzena, Xu Dong, Athey Brian D., Zhang Aidong, Ersoy Okan K., Li Guo-Zheng, Borodovsky Mark, Zhang Joe C., et al. , BMC Genomics, 2010, Volume 11 Suppl 3, p.I1, (2010)
“Bioinformatics in the Age of Translational Medicine” , Athey, Brian , ACRT-SCTS Meeting, Invited Presentation, 04/2010, Washington, DC, (2010)
“Collexis and VIVO Paving the Collexis Pathway to the National Research Network”, Athey, Brian , The First Annual VIVO National Conference, Invited presentation, 08/2010, Queens, NY., (2010)
ConceptGen: a gene set enrichment and gene set relation mapping tool., Sartor, Maureen A., Mahavisno Vasudeva, Keshamouni Venkateshwar G., Cavalcoli James, Wright Zachary, Karnovsky Alla, Kuick Rork, Jagadish H V., Mirel Barbara, Weymouth Terry, et al. , Bioinformatics, 2010 Feb 15, Volume 26, Issue 4, p.456-63, (2010)
Cross-domain neurobiology data integration and exploration., Xuan, Weijian, Dai Manhong, Buckner Josh, Mirel Barbara, Song Jean, Athey Brian, Watson Stanley J., and Meng Fan , BMC Genomics, 2010, Volume 11 Suppl 3, p.S6, (2010)
“CTSA Biomedical Informatics as a means to leverage local and national resources and capabilities to improve clinical research and translational effectiveness” , Athey, Brian , Annual UC Davis CTSC Retreat, Keynote speaker, 06/2010, Sacramento, CA, (2010)
“CTSA Biomedical Informatics as a Means to Leverage Local and National Resources to Improve Clinical Research and Translational Effectiveness” , Athey, Brian , Cytoscape Meeting, Invited presentation, 07/2010, Ann Arbor, MI, (2010)
The gputools package enables GPU computing in R., Buckner, Joshua, Wilson Justin, Seligman Mark, Athey Brian, Watson Stanley, and Meng Fan , Bioinformatics, 2010 Jan 1, Volume 26, Issue 1, p.134-5, (2010)
GSearcher: agile attribute querying for biological networks., Su, Gang, Athey Brian D., and Meng Fan , Bioinformatics, 2010 Dec 15, Volume 26, Issue 24, p.3138-9, (2010)
“Informatics” , Athey, Brian , Michigan Institute for Clinical and Health Research and University of Michigan Comprehensive Cancer Center Collaborations Meeting, Invited presentation, 10/2010, Ann Arbor, MI, (2010)
“Informatics, Information Technology, and Collaboration: Impact and Future Vision?”, Athey, Brian , MICHR External Advisory Board Meeting, Invited presentation, 10/2010, Ann Arbor, MI, (2010)
“Integrative Biomedical Informatics at the Beginning of the 21st Century” , Athey, Brian , University of North Carolina CTSA, Invited presentation, 02/2010, Durham, North Carolina, (2010)
“Interdisciplinary Research” , Athey, Brian , UROP Seminar Series, Invited presentation, 02/2010, Ann Arbor, MI, (2010)
“Late Breaking Presentations” , Athey, Brian , AMIA 2010, Sesson chair/moderator, 03/2010, San Francisco, CA, (2010)
Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks., Gao, Jing, V Tarcea Glenn, Karnovsky Alla, Mirel Barbara R., Weymouth Terry E., Beecher Christopher W., Cavalcoli James D., Athey Brian D., Omenn Gilbert S., Burant Charles F., et al. , Bioinformatics, 2010 Apr 1, Volume 26, Issue 7, p.971-3, (2010)
“Networks of Researchers” , Athey, Brian , AMIA 2010, Session chair, 3/2010, San Francisco, CA, (2010)
“New Approaches in Information Technology to Support Translational Research” , Athey, Brian , ACRTSCTS Meeting, Session chair, 04/2010, Washington, DC, (2010)
“Translational Biomedical Informatics 2010: Infrastructure and Scaling” , Athey, Brian , Third Annual Personalized Health Care National Conference, Invited presentation, 10/2010, Columbus, OH, (2010)
“UM Clinical Research Epic Interface Discussion”, Athey, Brian , Epic Research Meeting, Invited presentation, 10/2010, Ann Arbor, MI, (2010)
“Virtual Physiological Human (VPH)” , Athey, Brian , ARGOS Meeting, Invited presentation, 11/2010, Washington, DC, (2010)
2009
“Bioinformatics in the Age of Translational Medicine” , Athey, Brian , Graduate Seminar for the Utah Department of Biomedical Informatics, Invited presentation, 12/2009, Salt Lake City, UT, (2009)
“Data Explosion and Complexity in Bioinformatics (aka Cellular Systems Biology)” , Athey, Brian , SBE&S Conference, US National Academy of Sciences (NAS), Keynote Address, 04/2009, Washington, DC, (2009)
“Data Explosion and Complexity in Bioinformatics (aka Cellular Systems Biology)” , Athey, Brian , Worldcomp ’09, Keynote Address, 07/2009, Las Vegas, Nevada, (2009)
“Data Explosion and Complexity in Bioinformatics and Computational Biology (aka Systems Biology)” , Athey, Brian , 6th International Symposium on Recent Advances in Environmental Health Research, Keynote Address, 09/2009, Jackson, MS, (2009)
“The Emerging Field of Translational Bioinformatics-Lessons from the CTSA” , Athey, Brian , Georgetown University Biomedical Informatics Group, Invited presentation, 01/2009, Washington, DC, (2009)
High-throughput next-generation sequencing technologies foster new cutting-edge computing techniques in bioinformatics., Yang, Mary Qu, Athey Brian D., Arabnia Hamid R., Sung Andrew H., Liu Qingzhong, Yang Jack Y., Mao Jinghe, and Deng Youping , BMC Genomics, 2009, Volume 10 Suppl 1, p.I1, (2009)
Interactive Design Strategy for a Multi-Functional PAMAM Dendrimer-Based Nano-Therapeutic Using Computational Models and Experimental Analysis., Lee, Inhan, Majoros Istvan J., Williams Christopher R., Athey Brian D., and Baker James R. , J Comput Theor Nanosci, 2009, Volume 6, Issue 1, p.54-60, (2009)
“Keeping up with Bioinformatics and Computational Biology as applied to Biomedicine— Where has it been? Where is it going?” , Athey, Brian , Bioinformatics Symposium, Keynote Address, 4/2009, Columbia, SC, (2009)
“Keeping up with Bioinformatics and Computational Biology-Where have we been? Where are we going?”, Athey, Brian , First Annual ORNL Biomedical Science and Engineering Conference, Keynote Address, 03/2009, Oak Ridge, TN, (2009)
“Key Function Committee Overview”, Athey, Brian , NCRR Advisory Council, Invited presentation, 02/2009, Bethesda, MD, (2009)
Michigan molecular interactions r2: from interacting proteins to pathways., V Tarcea, Glenn, Weymouth Terry, Ade Alex, Bookvich Aaron, Gao Jing, Mahavisno Vasudeva, Wright Zach, Chapman Adriane, Jayapandian Magesh, Ozgür Arzucan, et al. , Nucleic Acids Res, 2009 Jan, Volume 37, Issue Database issue, p.D642-6, (2009)
MiSearch adaptive pubMed search tool., States, David J., Ade Alex S., Wright Zachary C., Bookvich Aaron V., and Athey Brian D. , Bioinformatics, 2009 Apr 1, Volume 25, Issue 7, p.974-6, (2009)
“NCIBI—An NIH NCBC Resource to Enhance Basic and Translational Research”, Athey, Brian , The Annual P41 Directors Meeting,. Invited presentation, 10/2009, Bethesda, MD, (2009)
New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites., Lee, Inhan, Ajay Subramanian S., Yook Jong In, Kim Hyun Sil, Hong Su Hyung, Kim Nam Hee, Dhanasekaran Saravana M., Chinnaiyan Arul M., and Athey Brian D. , Genome Res, 2009 Jul, Volume 19, Issue 7, p.1175-83, (2009)
Open Biomedical Ontology-based Medline exploration., Xuan, Weijian, Dai Manhong, Mirel Barbara, Song Jean, Athey Brian, Watson Stanley J., and Meng Fan , BMC Bioinformatics, 2009, Volume 10 Suppl 5, p.S6, (2009)
Relationship between clinical contourometric measurements and vertebral rotation in adolescent idiopathic scoliosis., Cimić, Mislav, Kovac Vladimir, Smiljanić Iva, Kovac Ida, Cimić Adrijana, and Smoljanović Tomislav , Coll Antropol, 2009 Dec, Volume 33 Suppl 2, p.127-33, (2009)
“The Relationship Between Informatics and Biomedical Research & Education: Current and Future Perspectives” , Athey, Brian , Center for Computational Medicine and Bioinformatics Seminar Series. Invited presentation, 09/2009, Ann Arbor, MI, (2009)
Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs., Bernstam, Elmer V., Hersh William R., Johnson Stephen B., Chute Christopher G., Nguyen Hien, Sim Ida, Nahm Meredith, Weiner Mark G., Miller Perry, DiLaura Robert P., et al. , Acad Med, 2009 Jul, Volume 84, Issue 7, p.964-70, (2009)
“Translational Bioinformatics in Support of Real and Virtual Patients” , Athey, Brian , The 17th Annual MMVR Conference NextMed: Design for/the Well Being, Invited presentation, 1/2009, Long Beach, CA, (2009)
The University of Michigan Honest Broker: a Web-based service for clinical and translational research and practice., Boyd, Andrew D., Saxman Paul R., Hunscher Dale A., Smith Kevin A., Morris Timothy D., Kaston Michelle, Bayoff Frederick, Rogers Bruce, Hayes Pamela, Rajeev Namrata, et al. , J Am Med Inform Assoc, 2009 Nov-Dec, Volume 16, Issue 6, p.784-91, (2009)
2008
“Application and Architectural Challenges in Basic, Clinical, and Translational Research (Panel)” , Athey, Brian , caGrid Roadmap Workshop, Invited presentation, 02/2008, Columbus, OH, (2008)
A bioinformatics analysis of the cell line nomenclature., Sarntivijai, Sirarat, Ade Alexander S., Athey Brian D., and States David J. , Bioinformatics, 2008 Dec 1, Volume 24, Issue 23, p.2760-6, (2008)
Delivering informatics capabilities to an AHC research community through public/private partnerships (PPP)., Smith, Kevin A., Athey Brian D., Chahal Amar P. S., and Sahai Priti , AMIA Annu Symp Proc, 2008, p.1216-7, (2008)
A diagram editor for efficient biomedical knowledge capture and integration., Yu, Bohua, Jakupovic Elvis, Wilson Justin, Dai Manhong, Xuan Weijian, Mirel Barbara, Athey Brian, Watson Stanley, and Meng Fan , Summit on Translat Bioinforma, 2008, Volume 2008, p.130-4, (2008)
Discriminating single-base difference miRNA expressions using microarray Probe Design Guru (ProDeG)., Lee, Inhan, Ajay Subramanian S., Chen Haiming, Maruyama Atsushi, Wang Nulang, McInnis Melvin G., and Athey Brian D. , Nucleic Acids Res, 2008 Mar, Volume 36, Issue 5, p.e27, (2008)
“The Emergence of Translational Bioinformatics – A National Perspective”, Athey, Brian , Bioinformatics and Systems Biology, Invited presentation, 12/2008, (2008)
“The Emerging Field of Translational Bioinformatics – A National Perspective” , Athey, Brian , Worldcomp ’08. Keynote Address, 07/2008, Las Vegas, NV, (2008)
"The Emerging Field of Translational Bioinformatics-A National Perspective" , Athey, Brian , Indiana University School of Informatics Colloquia, Invited presentation, 10/2008, Indianapolis, IN, (2008)
"Integrative Biomedical Informatics as a Means to Accelerate Clinical and Translational Research" , Athey, Brian , US Critical Illness and Injury Trials Group, Invited presentation, 11/2009, Bethesda, MD, (2008)
“Integrative Biomedical Informatics’—What Has Been Done and What is Left to Do?”, Athey, Brian , Electrical Engineering and Computer Science Department Colloquium Seminar at Case Western Reserve University, Invited presentation, 03/2008, (2008)
iTools: a framework for classification, categorization and integration of computational biology resources., Dinov, Ivo D., Rubin Daniel, Lorensen William, Dugan Jonathan, Ma Jeff, Murphy Shawn, Kirschner Beth, Bug William, Sherman Michael, Floratos Aris, et al. , PLoS One, 2008, Volume 3, Issue 5, p.e2265, (2008)
“The NIH National Center for Integrative Biomedical Informatics (NCIBI)” , Athey, Brian , Co-chair of the National Biomedical Computing Centers (NCBC’s) plenary panel, 03/2008, San Francisco, CA, (2008)
S03-Panel: Towards a Set of Unified NIH Computational, Data, and Community Infrastructures to Support Translational Bioinformatics, Athey, B D., Becich Michael J., M Ellisman, and Saltz Joel , AMIA 2008 Summit on Translational Bioinformatics Conference, San Francisco, CA, (2008)
2007
An active visual search interface for Medline., Xuan, Weijian, Dai Manhong, Mirel Barbara, Wilson Justin, Athey Brian, Watson Stanley J., and Meng Fan , Comput Syst Bioinformatics Conf, 2007, Volume 6, p.359-69, (2007)
The Cell Line Ontology and its use in tagging cell line names in biomedical text., Sarntivijai, Sirarat, Ade Alexander S., Athey Brian D., and States David J. , AMIA Annu Symp Proc, 2007, p.1103, (2007)
“Collaborate to Compete —An Introduction to the NIH National Center for Integrative Biomedical Informatics (NCIBI)” , Athey, Brian , NIDA Genetics Consortium Meeting, Invited presentation, 11/2007, Rockville, MD, (2007)
“Digital Biomedical Research Driving IT Transformation at the University of Michigan Medical School and Health System – Preventative Medicine for Security Leaks”, Athey, Brian , Clinical Research Forum IT Roundtable. Invited plenary presentation, 11/2007, Washington, DC, (2007)
“Federating and Growing High Performance Computing and Data Environments to Support Research at the University of Michigan Medical School”, Athey, Brian , Harvard Biomedical HPC Leadership Summit 2007. Invited plenary presentation, 10/2007, Boston, MA, (2007)
“From the 20th Century to 'Flatland' - Fissures in the Biomedical Knowledge Landscape: Challenges, Opportunities, and Responsibilities”, Athey, Brian , Invited extramural presentation, Designing Cyberinfrastructure for Collaboration and Innovation. Emerging Frameworks and Strategies for Enabling and Controlling Knowledge. National Academy of Engineering, 01/2007, Washington, DC, (2007)
“The Future of the NLM Visible Human”, Athey, Brian , Invited participant, Planning Meeting: Visible Human Project: Scope and Scale for the Future, 01/2007, Bethesda, MD, (2007)
An 'Honest Broker' mechanism to maintain privacy for patient care and academic medical research., Boyd, Andrew D., Hosner Charlie, Hunscher Dale A., Athey Brian D., Clauw Daniel J., and Green Lee A. , Int J Med Inform, 2007 May-Jun, Volume 76, Issue 5-6, p.407-11, (2007)
“Integrating Biomedical Informatics: Overview and Collaborative Opportunities with the NIH National Center for Integrative Biomedical Informatics (NCIBI)”, Athey, Brian , NBCR Summer Institute, Cyberinfrastructure & Multiscale Modeling, visiting professorship, UCSD, 07/2007, La Jolla, CA, (2007)
“Interoperable Informatics Systems in Cancer Center Collaborative Networks” , Athey, Brian , American Association of Cancer Institutes Annual Meeting. Invited plenary presentation, 10/2007, (2007)
“Introduction to a Systems View of Biology, Toolbox for Systems Biology American Society of Nephrology”, Athey, Brian , American Society of Nephrology, Invited plenary presentation, 11/2007, San Francisco, CA, (2007)
Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together., Jayapandian, Magesh, Chapman Adriane, V Tarcea Glenn, Yu Cong, Elkiss Aaron, Ianni Angela, Liu Bin, Nandi Arnab, Santos Carlos, Andrews Philip, et al. , Nucleic Acids Res, 2007 Jan, Volume 35, Issue Database issue, p.D566-71, (2007)
“The NIH National Center for Biomedical Informatics (NCIBI)--Integrating Biomedical Informatics: Overview and Collaborative Opportunities” , Athey, Brian , IMSCCS 2007: Cyberinfrastructure-enabled Computational Science. Keynote Address, 08/2007, University of Iowa, Iowa City, IA, (2007)
“The NIH National Center for Biomedical Informatics (NCIBI)--Integrating Biomedical Informatics: Overview and Collaborative Opportunities” , Athey, Brian , IEEE 7th International Symposium on BioInformatics and BioEngineering (BIBE). Keynote Address, 10/2007, (2007)
“The NIH National Center for Biomedical Informatics - Overview and Collaborative Opportunities”, Athey, Brian , Invited extramural Platform presentation, INDY 2007 Midwest Regional Bioinformatics Conference, 05/2007, Indianapolis, IN, (2007)
Simplifying access to a Clinical Data Repository using schema summarization., Yu, Cong, Hanauer David A., Athey Brian D., Jagadish Hosagrahar V., and States David J. , AMIA Annu Symp Proc, 2007, p.1163, (2007)
“Towards Personalized Medicine in Surgery: Anatomical Variation, Multiscale Data, and Bringing Together Practice, Education, and Training” , Athey, Brian , Invited extramural presentation, and Panel: Interactive Real-Time Surgical Education on the Web: Exploring the New Paradigm in the Age of Google; Medicine Meets Virtual Reality, 02/2007, Long Beach, CA, (2007)
2006
“The Clinical Translational Sciences Award (CTSA) and Informatics”, Athey, Brian, and Saltz Joel , Invited extramural presentation, American Medical Informatics Association (AMIA) 2006. Brian Athey and Joel Saltz, Panel Co-Chairs, 11/2006, (2006)
“Diabetes Research Opportunities in Collaboration with the NIH National Center for Biomedical Informatics (NCIBI)", Athey, Brian , NIDDK Diabetes Research and Training Center Directors Annual Meeting, invited extramural presentation, 11/2006, (2006)
"The Emergence of Human Systems Biology and its Origins in the Visible Human Project", Athey, Brian , Keck Center 16th Annual Research Conference, Visiting professorship, Plenary Keynote, 10/2006, Houston, TX, (2006)
“From the 20th Century to 'Flatland': Computational Medicine and Biology in the 21st Century", Athey, Brian , IBM Research and Life Sciences Executive Leadership Meeting, Wadsworth Labs, extramural presentation, 10/2006, White Plains, NY, (2006)
"An 'Honest Broker' Mechanism to maintain Privacy for Patient Care and Academic Medical Research", Boyd, A D., Hosner Charles, Hunscher Dale A., Athey B D., Clauw Daniel, and Green Lee A. , Presentation to Health Care Information Security Working Group, International Medical Informatics Association, 04/2006, Dijon, France, (2006)
“Multiscale Modeling, Systems Biology, and the Digital Human Project - Statistical Perspectives", Athey, Brian , Leeds 25th Annual Statistical Research Workshop (LASR), Visiting professorship, Plenary Keynote Lecture, 07/2006, University of Leeds, Leeds, UK, (2006)
SNP Function Portal: a web database for exploring the function implication of SNP alleles., Wang, Pinglang, Dai Manhong, Xuan Weijian, McEachin Richard C., Jackson Anne U., Scott Laura J., Athey Brian, Watson Stanley J., and Meng Fan , Bioinformatics, 2006 Jul 15, Volume 22, Issue 14, p.e523-9, (2006)
“Two Biomedical Research Paradigms and Emerging Issues” , Athey, Brian , Invited extramural presentation, Science Commons Symposium at the National Academy of Sciences (NAS), 10/2006, (2006)
“The Virtual Patient, the Digital Human, and Integrative Biomedical Informatics”, Athey, Brian , Invited extramural presentation, Medicine Meets Virtual Reality (MMVR-14), 01/2006, Long Beach, CA, (2006)
2005
“Biophotonics and Biosensors: Applications to Medicine - Lessons from Michigan” , Athey, Brian , Visiting professorship and keynote address, Emerging Technology Seminar, 04/2005, University of Hawaii- Manoa, Honolulu, HI, (2005)
Challenges in presenting high dimensional data to aid in triage in the DARPA virtual soldier project., Boyd, A D., Wright Z C., Ade A S., Bookstein F, Ogden J C., Meixner W, Athey B D., and Morris T , Stud Health Technol Inform, 2005, Volume 111, p.68-74, (2005)
“The Challenges of Big 'Science' and the Limits of the Individual” , Athey, Brian , Visiting professorship, IUPS Physiome Project, http://nbcr.net/physiome/schedule.htm , 03/2005, San Diego, CA, (2005)
“The DARPA Virtual Soldier Program. A Multiscale Experiment, Modeling, Simulation R&D Program” , Athey, Brian , US Army Research Office (ARO) Workshop - 'Multiscale Phenomenon: Experiment, Theory, and Modeling", 07/2005, Research Triangle Park, NC, (2005)
“The DARPA Virtual Soldier Project and Human Systems Biology” , Athey, Brian , Visiting professorship, Computational Physiology: From Genome to Physiome, 03/2005, San Diego, CA, (2005)
Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data., Dai, Manhong, Wang Pinglang, Boyd Andrew D., Kostov Georgi, Athey Brian, Jones Edward G., Bunney William E., Myers Richard M., Speed Terry P., Akil Huda, et al. , Nucleic Acids Res, 2005, Volume 33, Issue 20, p.e175, (2005)
The "Honest Broker" method of integrating interdisciplinary research data., Boyd, Andrew D., Hunscher Dale A., Kramer Adam J., Hosner Charles, Saxman Paul, Athey Brian D., Greden John F., and Clauw Dan C. , AMIA Annu Symp Proc, 2005, p.902, (2005)
miBLAST: scalable evaluation of a batch of nucleotide sequence queries with BLAST., Kim, You Jung, Boyd Andrew, Athey Brian D., and Patel Jignesh M. , Nucleic Acids Res, 2005, Volume 33, Issue 13, p.4335-44, (2005)
Opening and Closing Addresses. 13th International Society of Molecular Biology Annual Meeting, Athey, Brian , ISMB Conference Co-organizer, invited extramural presentation, 06/2005, Detroit, MI, (2005)
“The Virtual Soldier Project” Keynote address , Athey, Brian , Medicine Meets Virtual Realty (MMVR), 1/2005, (2005)
2004
“Challenges of HIPAA Regulations in Academic Biomedical Research”, Athey, Brian , Invited extramural presentation, MedInfo 2004, 09/2004, (2004)
“The DARPA Virtual Soldier Program: Presentation to members of the Michigan Congressional Delegation”, Athey, Brian , 07/2004, (2004)
Guidelines for incorporating non-perfectly matched oligonucleotides into target-specific hybridization probes for a DNA microarray., Lee, Inhan, Dombkowski Alan A., and Athey Brian D. , Nucleic Acids Res, 2004, Volume 32, Issue 2, p.681-90, (2004)
“Information Technology Security as Intertwined with Privacy and Confidentiality in Biomedical Research", Athey, Brian , 12th annual University of Miami Conference, Clinical Ethics: Debates, Decisions, Solutions, Miami, FL, (2004)
Noise suppression and optical sectioning by non-phase-recording interferometry., Leith, Emmett N., Chien Wei-Chen, Mills Kurt D., Athey Brian D., Dilworth David S., and Beals James L. , Appl Opt, 2004 Aug 10, Volume 43, Issue 23, p.4512-9, (2004)
“SEWG: Human Aided Information Processing Systems for Data Exploration, Analysis and Decision Making”, Athey, Brian , Invited extramural presentation - Government, DARPA Systems Engineering Working Group, 03/2004, Palo Alto, CA, (2004)
“Walden: A Scalable Solution for Grid Account Management” , Kirshner, BA, Hacker TJ, Athey Brian, and WA Adamson , Invited extramural presentation at the 5th International Workshop on Grid Computing (GRID 2004), 11/2004, Pittsburgh, PA, (2004)
2003
“Funding opportunities for Bioinformatics US Army OntoExpress” , Athey, Brian , Invited extramural presentation – Government, USAMRMC Bioinformatics Workshop, 11/2003, Fort Detrick, MD, (2003)
“Future Needs for Bioinformatics, Computational Biology, Bioengineering, and Biomedical Imaging Requiring Next Generation BioGrids”, Athey, Brian , Visiting professorship, SURA Biogrid Workshop , 01/2003, Research Triangle Park, NC, (2003)
“Lessons Learned: 12 Years of the Visible Human at the University of Michigan” , Athey, Brian , Invited extramural presentation, Plenary panel talk, FASEB, 04/2003, Ann Arbor, MI, (2003)
“Life Sciences Informatics Grids: Myth, Reality and Promise” , Athey, Brian , Scientific Computing Workshop - Wayne State University, 09/2003, Detroit, MI, (2003)
“MCBI’s Plans: Biological Data Integration” , Athey, Brian , Invited extramural presentation, Michigan Center for Biological Information (MCBI) Retreat, 08/2003, (2003)
“Modeling and Simulation to Enhance Bioterrorism Preparedness” , Athey, Brian , BioTerrorism Summit, 10/2003, Honolulu, HI, (2003)
“Next Generation Internet (NGI) Implementation to Serve Visible Human Datasets Phase II: Development of Test Beds” , Athey, Brian , Invited extramural presentation, NLM/NGI Visible Human Reverse Site Visit, 08/2003, Bethesda, MD, (2003)
Optical sectioning by holographic coherence imaging: a generalized analysis., Leith, Emmett N., Chien Wei-Chen, Mills Kurt D., Athey Brian D., and Dilworth David S. , J Opt Soc Am A Opt Image Sci Vis, 2003 Feb, Volume 20, Issue 2, p.380-7, (2003)
"Optimizing H.P. Computing Grid Resources for the Bioterrorism Application” , Athey, Brian , U.S. Army DoD Pacific Command Bioterrorism Retreat, 03/2003, Maui High Performance Computing Center, Maui, HI, (2003)
2002
Analysis of time-gated imaging through scattering media by a Fourier optics approach., Leith, Emmett N., Mills Kurt D., Grannell Shawn, Dilworth David S., Athey Brian D., and Lopez Joaquin , J Opt Soc Am A Opt Image Sci Vis, 2002 Mar, Volume 19, Issue 3, p.532-6, (2002)
“Bioinformatics and Bioimaging IT Infrastructure: What is the MCBI and the CTA?”, Athey, Brian , 1st Annual Conference of Pathology Bioinformatics, 11/2002, Ann Arbor, MI, (2002)
Correlations among angular wave component amplitudes in elastic multiple-scattering random media., Hoover, Brian G., Deslauriers Louis, Grannell Shawn M., Ahmed Rizwan E., Dilworth David S., Athey Brian D., and Leith Emmett N. , Phys Rev E Stat Nonlin Soft Matter Phys, 2002 Feb, Volume 65, Issue 2 Pt 2, p.026614, (2002)
“Deploying Scalable Information Infrastructure (SII) End-to-End: The Role of Middleware and Standards” , Athey, Brian , Invited extramural presentation made to the Surgeon Generals of all the U.S Military Services – Government, U.S. Department of Defense ASBREM , 2/2002, Baltimore, MD, (2002)
“Deploying Scalable Information Infrastructure (SII) End-to-End: The Role of Middleware and Standards” , Athey, Brian , Invited extramural presentation, International Conference on Virtual Worlds and Simulation, 1/2002, San Antonio, TX, (2002)
“The End-to-End Performance Effects of Parallel TCP Sockets on a Lossy Wide-Area Network” , Athey, Brian , Invited extramural presentation, IEEE-CS/ACM International Parallel and Distributed Processing Symposium (IPDPS), 04/2002, (2002)
“Experiences Using Web100 for Visible Human Testbeds” , Athey, Brian , Invited extramural presentation, Web100 Evaluator’s Workshop, 08/2002, Boulder, CO, (2002)
“Future Needs for Bioinformatics, Computational Biology, Bioengineering, and Biomedical Imaging Requiring Next Generation Supercomputing” , Athey, Brian , Invited extramural presentation – Government, DARPA High Productivity Computing Systems (HPCS) Workshop, 01/2003, Arlington, VA, (2002)
“How to Avoid Spaghetti While Scaling Just-in-Time Training Capabilities”, Athey, Brian , Visiting professorship, NASA/MITAC Conference on Just-in-Time Training in Medicine, 05/2003, Virginia Commonwealth University, (2002)
“The Michigan Center for Biological Information (MCBI)”, Athey, Brian , Invited extramural presentation, Michigan Life Sciences Corridor Biotechnology Symposium, 05/2002, (2002)
“Simplification and Diversity: An Ecosystem Mimic to the Rapid, Robust Scalable Information Infrastructure (SII) Deployment of CBNR Trauma Environments” , Athey, Brian , Invited briefing for White House, special seminar to Dr. Robert Foster, Director of Biosystems, DDR&E, 04/2002, (2002)
“UM BioGrid Update” , Athey, Brian , Invited extramural presentation and onference organizer, given at Michigan Center for Biological Information (MCBI), to state-wide audience, 09/2002, (2002)
“The Visible Human Today” , Athey, Brian , “Plenary speaker, invited extramural presentation, iGrid 2002 Conference, 09/2002, Amsterdam, Netherlands, (2002)
2001
“Application Responsibilities in End-to-End Network Performance” , Athey, Brian , Invited extramural presentation, SC2001 Internet2 End-to-End Performance Workshop, 11/2001, Denver, CO, (2001)
Final report of the meeting "modeling & simulation in medicine: towards an integrated framework". July 20-21, 2000, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA., Higgins, G, Athey B, Bassingthwaighte J, Burgess J, Champion H, Cleary K, Dev P, Duncan J, Hopmeier M, Jenkins D, et al. , Comput Aided Surg, 2001, Volume 6, Issue 1, p.32-9, (2001)
“Grid Computing Solutions for the Physical and Life Sciences”, Athey, Brian , Invited extramural presentation, SC2001 Sun HPC Consortium, 11/2001, Denver, CO, (2001)
“How to Move from Static to Something Moving End-to-End or The How? And Why? Of Infrastructure”, Athey, Brian , Invited extramural presentation, Internet2 National Meeting, 04/2001, Washington, DC, (2001)
Investigation of ultrafast time gating by spatial filtering., Mills, K D., Deslaurier L, Dilworth D S., Grannell S M., Hoover B G., Athey B D., and Leith E N. , Appl Opt, 2001 May 10, Volume 40, Issue 14, p.2282-9, (2001)
“Maximizing End-to-End Network Performance” , Athey, Brian , Invited extramural presentation, High Energy/Nuclear Physics Internet2 Working Group, 10/2001, Ann Arbor, MI, (2001)
“A Methodology for Account Management in Grid Computing Environments”, Athey, Brian , Invited extramural presentation, SC2001 Grid 2001 Workshop, 11/2001, Denver, CO, (2001)
“Michigan’s Emerging Position in the Global Information Infrastructure for the Life Sciences”, Athey, Brian , Invited extramural presentation. Van Andel Research Institute, 03/2001, Grand Rapids, MI, (2001)
“Michigan-Based Imaging Capabilities to Respond to Terrorist Threats” , Athey, Brian , Private briefing given to Senator Carl Levin, Ranking Member: Senate Armed Services Committee, 11/2001, (2001)
2000
“21st Century Pathology Informatics and Integration into the Emerging Hospital Information System” , Athey, Brian , Keynote address, American College of Pathology, 10/2000, San Diego, CA, (2000)
“Account Allocations on the Grid” , Athey, Brian , Invited extramural presentation, First Global Grid Forum & European Data-grid Conference, Account Models Research Group, 03/2000, Amsterdam, (2000)
“Directed Nano-Dendrimeric Modeling and Simulation” , Athey, Brian , 1) National Cancer Institute Unconventional Innovations Program (UIP) PI Meeting; 2) The Midwest Clinical Society (Chicago, IL), and 3) the BioMEMS and Biomedical Nanotechnology 2000 Conference, 10/2000, Columbus, OH, (2000)
“Postmodern Anatomy and its Enabling Technologies” , Athey, Brian , First Annual Digital Human Workshop, National Library of Medicine, 1/2000, (2000)
“Towards a Visible Human National Educational Collaboratory” , Athey, Brian , Invited extramural presentation, The Third Visible Human Project Conference, NLM, 10/2000, Bethesda, MD, (2000)
“Visible Human Project Distributed Visualization”, Athey, Brian, and Hacker TJ , NGI/NREN Workshop V, Gigabit Networking: The End-to- End View. NASA Ames Research Center, 08/2000, Moffett Field, CA, (2000)
“Visualization and Manipulation of Visible Human Datasets Using the Next Generation Internet (Internet2)”, Athey, Brian , Invited extramural presentation, Metropolitan Washington Computer Assisted Surgery Society, 03/2000, (2000)
1999
“High Performance Landmark Driven Navigation of the Visible Human” , Athey, Brian , Invited extramural presentation, AIPR, Cosmos Club, 10/1999, Washington, DC, (1999)
“Nanoscale Platforms for Therapeutic Delivery” , Athey, Brian , Invited extramural presentation. Defense Sciences Research Council, 09/1999, (1999)
“NGI Delivery of Visible Human Data in Support of Anatomy Training” , Athey, Brian , Invited extramural presentation, Pittsburgh Supercomputing Center Speaker Series, Carnegie Mellon University, 04/1999, Pittsburgh, PA, (1999)
“A Virtual Reality System for Human Gross Anatomy Instruction”, Athey, Brian , Invited extramural presentation, Medicine Meets Virtual Reality 7, 01/1999, San Francisco, CA, (1999)
1998
“Modeling of Biological Systems (MOBS)” , Athey, Brian , Visiting professorship and invited participant, course planning session. Woods Hole Marine Biological Laboratory. R. Silver, Course Director, supported by the Burroughs Welcome Foundation, 01/1998, (1998)
“The Visible Human Female WWW Browser and the Next Generation Internet (NGI)” , Athey, Brian , Invited extramural presentation, 2nd Visible Human Conference, 10/1998, Bethesda, MD, (1998)
1997
“GIS and Medicine: New Frontiers” , Athey, Brian , A half-day workshop organized by Athey BD and given to the University of Michigan research community. University of Michigan Office of the Vice-President for Research and the Rackham School of Graduate Studies, 03/1997, (1997)
“Multi- and Hyper-spectral Geo-sensing Capabilities Transferred to the Microscope and Mesoscope” , Athey, Brian , Invited extramural presentation and guest faculty, First International Conference of Multispectral Microscopy, Warner-Lambert, Parke-Davis Research Division., 06/1997, (1997)
“Visualizing the Patten Embryological Collection” , Athey, Brian , Invited extramural presentation, National Institute of Child Health and Development, 10/1997, (1997)
1996
Contribution of actin cytoskeletal alterations to ATP depletion and calcium-induced proximal tubule cell injury., Nurko, S, Sogabe K, Davis J A., Roeser N F., Defrain M, Chien A, Hinshaw D, Athey B, Meixner W, Venkatachalam M A., et al. , Am J Physiol, 1996 Jan, Volume 270, Issue 1 Pt 2, p.F39-52, (1996)
“Medicine and Terabits” , Athey, Brian , Invited extramural presentation and guest faculty, University of Michigan College of Engineering/State of Michigan Joint Conference (with Wistra Institute/Republic of Germany) on Ultra Highspeed Optical Networks, 10/1996, (1996)
Real-time two-photon confocal microscopy using a femtosecond, amplified Ti:sapphire system., Brakenhoff, G J., Squier J, Norris T, Bliton A C., Wade M H., and Athey B , J Microsc, 1996 Mar, Volume 181, Issue Pt 3, p.253-9, (1996)
“Semi-Automated Electron Microscopy Service for Pathology” , Athey, Brian , Guest faculty and member/plenary lecturer, First Annual Conference on Anatomic Pathology Informatics, Imaging, and the Internet. Visiting Professorship and conference co-founder (now in 10th year), 11/1996, University of Pittsburgh Medical Center, (1996)
“Tissue Imaging”, Athey, Brian , Invited extramural presentation, Defense Science Research Council, 11/1996, (1996)
“Using the Visible Human as an Image Database Locator” , Athey, Brian , Invited extramural presentation, National Library of Medicine First Annual Conference on the Visible Human, 10/1996, (1996)
1995
“A Modern Imaging Collaboratory for Anatomy” , Athey, Brian , Invited extramural presentation and plenary speaker, FASEB meeting, 05/1995, Atlanta, GA, (1995)
1994
“Confocal Microscopy of Tissues and Cells of Clinical Interest” , Athey, Brian , Extramural departmental seminar, Department of Biology, Oakland University, Rochester, MI, 10/1994, Rochester, MI, (1994)
F-actin, tubulin and spectrin in the organ of Corti: comparative distribution in different cell types and mammalian species., Raphael, Y, Athey B D., Wang Y, Lee M K., and Altschuler R A. , Hear Res, 1994 Jun 1, Volume 76, Issue 1-2, p.173-87, (1994)
“A Networked Computer System to Visualize Reconstructed Embryos in Three Dimensions” , Athey, Brian , Extramural presentation, NICHD Workshop on Computer-Assisted Embryo Imaging. National Institutes of Health, 05/1994, Bethesda, MD, (1994)
“Visualizing 3-D Biological Structure Using the Confocal Microscope” , Athey, Brian , Invited extramural presentation, Optical Society of America, 09/1994, Ann Arbor, MI, (1994)
1993
“An Efficient Surface Rendering Technique Using Fourier Descriptors to Visualize Three- Dimensional Biomedical Image Data Sets” , Athey, Brian , Invited extramural presentation, IEEE 36th Midwest Symposium, 08/1993, (1993)
Monocyte-endothelial adhesion in chronic rheumatoid arthritis. In situ detection of selectin and integrin-dependent interactions., Grober, J S., Bowen B L., Ebling H, Athey B, Thompson C B., Fox D A., and Stoolman L M. , J Clin Invest, 1993 Jun, Volume 91, Issue 6, p.2609-19, (1993)
Structure of the reticular lamina and repair after noise injury., Raphael, Y, Athey B D., Wang Y, and Hawkins J E. , Rev Laryngol Otol Rhinol (Bord), 1993, Volume 114, Issue 3, p.171-5, (1993)
"Systems Approach to Visualizing Confocal Microscopy Data in Three Dimensions” , Athey, Brian , Extramural departmental seminar: Department of Biomedical Engineering, University of California, 03/1993, San Diego, CA, (1993)
1992
“Envisioning Information” , Athey, Brian , Institute Faculty, visiting professorship and invited participant in the Prairie Festival, 05/1992, Salina, KS, (1992)
1990
The diameters of frozen-hydrated chromatin fibers increase with DNA linker length: evidence in support of variable diameter models for chromatin., Athey, B D., Smith M F., Rankert D A., Williams S P., and Langmore J P. , J Cell Biol, 1990 Sep, Volume 111, Issue 3, p.795-806, (1990)
Radial density distribution of chromatin: evidence that chromatin fibers have solid centers., Smith, M F., Athey B D., Williams S P., and Langmore J P. , J Cell Biol, 1990 Feb, Volume 110, Issue 2, p.245-54, (1990)
1986
Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length., Williams, S P., Athey B D., Muglia L J., Schappe R S., Gough A H., and Langmore J P. , Biophys J, 1986 Jan, Volume 49, Issue 1, p.233-48, (1986)
1977
Initiation of human parturition. VI. Identification and quantification of progesterone metabolites produced by the components of human fetal membranes., Milewich, L, Gant N F., Schwarz B E., Prough R A., Chen G T., Athey B, and Macdonald P C. , J Clin Endocrinol Metab, 1977 Sep, Volume 45, Issue 3, p.400-11, (1977)